Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CRC rs35712556 chr7:62035473 G/A 9.23E-7 364 23.37 20.05 11.27 KM Plot
CRC rs35738947 chr7:62109901 C/T 6.58E-7 370 24.33 19.93 11.27 KM Plot
CRC rs35768769 chr7:62073932 G/A 6.97E-7 368 24.02 20.23 11.27 KM Plot
CRC rs35812310 chr6:161802821 C/T 8.37E-8 364 22.4 19.88 6.8 KM Plot
CRC rs35851743 chr7:61077518 C/T 1.17E-6 369 24.15 20.27 10.27 KM Plot
CRC rs35923618 chr7:39144119 G/T 5.53E-5 373 22.35 23.53 7.6 KM Plot
CRC rs35924157 chr7:62062693 T/A 9.68E-7 364 23.37 20.05 11.27 KM Plot
CRC rs35931488 chr7:62139409 C/T 4.89E-7 368 24.2 20.08 11.27 KM Plot
CRC rs35933476 chr7:62050379 C/T 7.41E-7 367 23.83 20.23 11.27 KM Plot
CRC rs36043920 chr7:57841449 C/T 1.75E-5 368 23.33 20.38 11.92 KM Plot
CRC rs368363933 chr12:59970700 A/T 5.78E-5 369 11.58 19.87 24.98 KM Plot
CRC rs371960051 chr12:59970701 T/A 5.28E-5 372 11.58 19.2 24.98 KM Plot
CRC rs374182160 chr12:59970694 AG/A 5.78E-5 369 11.58 19.87 24.98 KM Plot
CRC rs3761764 chr5:54572163 T/C 6.09E-5 371 22.3 24.2 9.67 KM Plot
CRC rs3804263 chr5:54735786 A/C 2.13E-5 374 9.67 22.43 22.37 KM Plot